Date

Session

Time

Event

31 Oct. 2012, Wednesday

Session 0: Opening Session

8:00-8:45

Reception

8:45-9:30

Opening Ceremony.Chair: Mengzhen KANG, Yves DUMONT

9:30-10:10

Invited Talk: Prof. C. Körner. When growth controls photosynthesis.Chair: Thierry FOURCAUD

10:10-10:20

Group Photo

10:20-10:35

Tea break

Session 1: Functional-Structural Plant Model

Chair: Philippe DE REFFYE

10:40-11:05

Olivier Taugourdeau, Jean-Francois Barczi and Yves Caraglio. Simulation of Morphogenetical gradients using a minimal Functional-Structural Plant Model (FSPM).

11:05-11:30

Gaëtan Louarn, Ela Frak, Didier Combes and Abraham Escobar-Gutiérrez. Modelling variations in individual plant productivity within a stand: comparison of top-down and bottom-up approaches in an alfalfa crop.

11:30-11:55

Alexandra Jullien, Rui Qi, Amelie Mathieu, Jean-Michel Allirand, Céline Richard-Molard and Bertrand Ney. Use of a structural-functional plant model to assess the morphogenetic plasticity. How does variation in phyllochron impact plant growth and development of Brassica napusin the GreenLab model?

11:55-12:20

Haoyu Wang, Mengzhen Kang and Jing Hua. Simulating plant plasticity under light environment: a source-sink approach.

12:20-13:30

Lunch

Session 2: System Biology

Chair: Loïc PAGES

13:30-14:10

Invited Talk: Prof. X. Yin. Crop systems biology as an avenue to bridge applied crop science and fundamental plant biology.

14:10-14:35

Marion Prudent, Zhan Wu Dai, Michel Génard, Nadia Bertin, Mathilde Causse and Philippe Vivin. Fruit size in relation to competition for resources: a common model shared by two species and several genotypes grown under contrasted carbohydrate levels.

14:35-15:00

Johannes Mueller, Andre Eschenroeder, Olaf Christen, Björn Junker and Falk Schreiber.  ProNet-CN Model: A Dynamic and Hierarchical Process Network that Couples Photosynthesis, Primary Carbon Metabolism and Effects of Leaf Nitrogen Status.

15:00-15:25

Delphine Luquet, Marie Camila Rebolledo and Jean-Christophe Soulie. Can functional structural plant models contribute to the genetic study of complex traits? Ecomeristem model application to rice early vigour and drought tolerance.

15:25-15:50

Fenni Kang, Veronique Letort and Paul-Henry Cournede. SUNLAB: a Functional-Structral Model for Genotypic and Phenotypic Characterization of the Sunflower Crop.

15:50-16:05

Tea break

Session 3: Root system: Modeling and Simulation

Chair: Yan GUO

16:05-16:30

Loïc Pagès, Delphine Moreau, Vaia Sarlikioti, Hassan Boukcim and Christophe Nguyen. ArchiSimple: a parsimonious model of the root system architecture.

16:30-16:55

Michael Renton, Pieter Poot and Jochem Evers. Simulation of Optimal Rooting Strategies: What’s the Best Way to Find a Wet Crack?

16:55-17:20

Elodie Tillier and Adrien Bonneu. Operator splitting for solving one minimalist and continuous model of root system growth.

17:20-17:45

Guillaume Lobet, Loïc Pagès and Xavier Draye. A modeling approach to determine the contribution of plant hydraulic conductivities on the water uptake dynamics in the soil-plant-atmosphere system.

17:45-18:10

Cao Xiaolei, Zhou Zuhao, Wang Ziru and Xu Yi. Art-of-stat of Terrestrial Eco-hydrological Mechanisms and Numerical Simulation.

18:10–19:30

PMA’12 Board Meeting

1 Nov. 2012, Thursday

Session 4: Three-dimensional Modeling and Applications 1

Chair: Gerhard BUCK-SORLIN

08:30-9:10

Invited Talk: Prof. J. Hanan. Functional Structural Plant Modelling: applications beyond the plant.

9:10-9:35

Vincent Migault, Didier Combes, Philippe Barre, Badara Gueye, Gaëtan Louarn and Abraham Escobar-Gutiérrez. Improved Modelling of Ryegrass Foliar Growth.

9:35-10:00

Christian Fournier and Christophe Pradal. A plastic, dynamic and reducible 3D geometric model for simulating gramineous leaves.

10:00-10:25

Tongxin Shi, Yan Guo, Yuhong Yang, Yuntao Ma, Jie Wu, Xiang Li and Zhaoli Xu. Quantification of Light Absorption and Photosynthesis of Tobacco Canopy Using 3-D Modeling.

10:25-10:40

Tea break

Session 5: Three-dimensional Modelling and Applications 2

Chair: Jochem EVERS

10:40-11:05

Romain Barillot, Didier Combes, Valérie Chevalier, Gaëtan Louarn and Abraham Escobar-Gutiérrez. Variability of pea morphogenesis. An exploratory study based on six pea genotypes with contrasted architectures.

11:05-11:30

Jie Long and Michael Jones. 3D Tree Modeling using Motion Capture.

11:30-11:55

Lifeng Xu, Jun Zhu, Michael Henke, Winfried Kurth, Weilong Ding and Gerhard Buck-Sorlin. Simulating Superior Genotypes for Plant Height based on QTLs: Towards Virtual Breeding of Rice.

11:55-12:20

Shenglian Lu, Xinyu Guo and Chunjiang Zhao. Multi-Scale Reconstruction of Crop Canopy.

12:20-13:30

Lunch

Session 6: Modeling Light Environment

Chair: Gaëtan LOUARN

13:30-13:55

Liqi Han, David Da Silva, Frederic Boudon, Thomas Cokelaer, Christophe Pradal, Robert Faivre and Evelyne Costes. Investigating the Influence of Geometrical Traits on Light Interception Efficiency of Apple Trees: a Modelling Study with MAppleT.

13:55-14:20

Jochem Evers and Sander van der Krol. Capturing hormonal and light interactions in a simulation model of shoot branching.

14:20-14:45

Cailian Lao, Ya Kong, Fan Huang, Baoguo Li and Yan Guo. Evaluating the contribution of complementary radiation on photosynthesis of maize canopy with 3D radiative transfer model.

14:45-15:10

Tingting Qian, Shenglian Lu, Weiliang Wen, Chunjiang Zhao and Xinyu Guo. Computational Experiments of light distribution and photosynthesis in cucumber (Cucumis sativus L.) canopy.

15:10-15:35

Qingfeng Song and Xin-Guang Zhu. Towards a fully mechanistic model of canopy photosynthesis - Development of canopy light environment and temperature modules.

15:35-15:50

Tea break

Session 7: Poster

Chair: Yuntao MA

15:51-15:54

Mohamed Allani, Mohamed Jabloun, Ali Sahli, Volker Hennings, Jobst Maßmann and Werner Müller. Enhancing on farm and regional irrigation management using MABIA-Region tool

15:55-15:58

Emna Bairam, Ali Sahli and Hichem Sahli. Analysing Global Climatic Change and its Impact on Fruit Tree Phenology using ClimaTree Tool: Example of Anna Apple Tree under Tunisian conditions

15:59-16:02

Gerhard Buck-Sorlin, Pascale Guillermin, Mickaël Delaire, Fatoumata Sané and Christian Le-Morvan. Towards a multi-scaled functional-structural model of apple, linking ecophysiology at the fruit and branch scales

16:03-16:06

Tsu-Wei Chen, Katrin Kahlen and Hartmut Stützel. Determining photosynthetic limitations under saturated and non-saturated light conditions

16:07-16:10

Delphine Draelants, Wim Vanroose, Jan Broeckhove and Gerrit T.S. Beemster. Influence of an exogenous model parameter on the steady states in an auxin transport model

16:11-16:14

Katrin Kahlen, Hartmut Stützel and Jana Zinkernagel. Modeling temperature-modulated stem growth of cucumber plants (Cucumis sativus L.)

16:15-16:18

Yilong Kuang, Huaiqing Zhang and Junshan Tan. The study of the stand simulation based on the spatial structure

16:19-16:22

Gaëtan Louarn, Serge Carré, Frédéric Boudon and Didier Combes. Characterization of whole plant leaf area properties using laser scanner point clouds

16:23-16:26

Jie Long and Michael Jones. 3D Tree Modeling using Motion Capture

16:27-16:30

Véronique Letort, Sylvie Sabatier, Selastique Akafou, Serge Hamon, Perla Hamon and Philippe de Reffye. Influence of pruning on biomass production and allocation of Coffea: experimental evidence of model prediction

16:31-16:34

Xiangdong Lei, Huiru Zhang and Huiquan Bi. Additive aboveground biomass equations for major tree species in over-logged forest region, northeast China

16:35-16:38

Budong Qian, Ted Huffman and Reinder De Jong. Simulated Crop Productivity on Different Soils in Canada

16:39-16:42

Fabio Takeshi Matsunaga, Miroslava Rakocevic and Jacques Duílio Brancher. InterpolMateS1- the Module for Interpolation of Growth and Production of Yerba-Mate

16:43-16:46

Amelie Mathieu, Alexandra Jullien, Jean-Michel Allirand and Bertrand Ney. Assessment of the role of initial conditions in the setting of heterogeneity of functional traits in a population of oilseed rape plants

16:47-16:50

Xiaodong Song and Gang Zhao. Sensitivity analysis for a forest growth model: a statistical and time-dependent point of view

16:51-16:54

Giuliano Vitali, Eugenio Magnanini, Niko Mennucci and Enrico Denti. VPN - Client-Server Object-Oriented Virtual Plant modeling tool

16:55-17:00

Rong Wang and Jing Ming Chen. Seasonal leaf area index variations derived from needle growth and fall measurements in two eastern white pine (Pinus strobes L.) stands

17:01-17:04

Dar-Hsiung Wang, Tsuyoshi Honjo, Han-Ching Hsieh, Yu-Jen Chiang, Chin-Shien Wu and Pin-An Yang. Visualization with Google Earth and Gaming Engine

17:05-17:08

Gang Zhao, Xiaodong Song, Changqing Yan and Qiang Yu. Parallelization of process-based models for high resolution modelling and integrated assessment

17:09-18:00

Poster discussion

18:30–21:00

Banquet

2 Nov. 2012, Friday

Session 8: Morphological Dynamics

Chair: Baogang HU

08:30-9:10

Invited Talk: Prof. E. Mjolsness. Topological Object Types for Morphodynamic Modeling Languages.

9:10-9:35

Sebastien Griffon and François de Coligny. AMAPstudio: a software suite for plants architecture modeling.

9:35-10:00

Katarina Smolenova, Michael Henke and Winfried Kurth. Rule-based integration of GreenLab into GroIMP with GUI aided parameter input.

10:00-10:25

Dong Li, Junmin Wang, Zhigang Zhan and Liyong Cao. Modeling and analyzing the influence of blade shape to rice structure.

10:25-10:40

Tea break

Session 9: Mathematical Modeling of Plant-Bioaggressor Interactions and in Biomechanics

Chair: Abraham ESCOBAR- GUTIÉRREZ

10:40-11:05

Jean-Baptiste Burie, Agnès Calonnec, Michel Langlais and Youcef Mammeri. Modeling the spread of a pathogen over a spatially heterogeneous growing crop.

11:05-11:30

Roumen Anguelov, Jean Lubuma and Yves Dumont. Mathematical Analysis of Vector-Borne Diseases on Plants.

11:30-11:55

Audrey Lebon, Ludovic Mailleret, Frédéric Grognard and Yves Dumont. Modelling Plant Compensatory Effects in Plant-Insects dynamics.

11:55-12:20

Thierry Fourcaud, Thomas Guillon and Yves Dumont. Simulation of tree branch motion.

12:20-13:30

Lunch

Session 10: Crop Models: Calibration and Application

Chair: Ep HEUVELINK

13:30-13:55

Ajit Govind, Jean-Marc Bonnefond, Jyothi Kumari, Christophe Moisy, Denis Loustau and Jean-Pierre Wigneron. Modeling the Ecohydrological Processes in the Landes de Gascogne, SW France.

13:55-14:20

Charlotte Baey, Anne Didier, Li Song, Sébastien Lemaire, Fabienne Maupas and Paul-Henry Cournède. Evaluation of the Predictive Capacity of Five Plant Growth Models for Sugar Beet.

14:20-14:45

Yuting Chen and Paul-Henry Cournède. Assessment of Parameter Uncertainty in Plant Growth Model Identification.

14:45-15:10

Shuai Zhang and Fulu Tao. Calibration and Validation of SIMRIW in Major Rice Production Regions in China.

15:10-15:35

Can Wang, Baogui Zhang and Xiaoyan Yan. Adaptation and application of soybean phenology model in North China spring soybean producing area.

15:35-16:00

Zhan Tian, Honglin Zhong, Laixiang Sun, Günther Fischer and Zhuoran Liang. Estimating Potential Yield of Wheat Production in China Based on Cross-scale Data-model Fusion.

16:00-16:20

Tea break

Session 11: Models on Tree Structure

Chair: Veronique LETORT

16:20-16:45

Michael Jones and Jie Long. Tortuosity as a Metric for Evaluating Branch Motion Paths.

16:45-17:10

Damien Sellier and Jonathan Harrington. Phloem sap flow and carbohydrate transport in vascular plants: a generic surface model.

17:10-17:35

Julien Sainte-Marie, Antoine Henrot, Laurent Saint-André, Matthieu Barrandon, Yann Nouvellon, Olivier Roupsard and Jean-Paul Laclau. Modelling the environmental influence on canopy dynamic and litterfall production of even-aged forest ecosystems: a multi-disciplinary approach.

17:35-18:00

Liyu Tang, Chongcheng Chen, Hongyu Huang, Jie Zou and Ding Lin. A coupled Architecture and Physiology 3D Growth Model for Young Longan Tree.

3 Nov., 2012, Saturday

Session 12: Multi-scale Modeling

Chair: Xinguang ZHU

08:30-9:10

Invited Talk: Prof. Larry Li. Metabolic scaling, modularity and criticality in plant growth modeling

9:10-9:35

Francois Feugier, Toshinori Kinoshita and Akiko Satake. Dynamical feedback between circadian clock and carbohydrate availability explains adaptive response of starch metabolism to longer night.

9:35-10:00

Fuyan Hu, Xingming Zhao, Luonan Chen, Kun He, Le Lu, Yongwei Cao and Jingdong Liu. Identifying Rice Arsenic Stress Response Pathways Based on Molecular Interaction Network.

10:00-10:25

Chuanli Wang, Longyun Guo and Zhuo Wang. Comparative Analysis of C3 and C4 Plants using Constraint-based Model.

10:25-10:40

Tea break

Session 13: Image Processing for Plant Scene

Chair: Chongcheng CHEN

10:40-11:05

Guilhem Brunel, Philippe Borianne, Gérard Subsol, Marc Jaeger and Yves Caraglio. Automatic characterization of the cell organization in light microscopic images of wood: application to the identification of the cell file.

11:05-11:30

Philippe Borianne, Guilhem Brunel. Automated Valuation of Leaves Area for large-scale analysis needing data coupling or petioles deletion.

11:30-11:55

Marc Jaeger. Enhancing virtual natural scenes using quick and dirty image based recipes.

11:55-12:20

Closing Ceremony

13:00-20:00

Tour